SyMBac
legacy
Introduction
Introduction
Installation
FAQs
Detailed guide: Mother Machine
Bacterial growth simulations
Scene generation / Scene drawing
Examples
Convert SyMBac data to be compatible with Omnipose
Training Omnipose
Segmenting with Omnipose
API reference
SyMBac.cell_geometry
SyMBac.general_drawing
SyMBac.misc
SyMBac.phase_contrast_drawing
SyMBac.optimisation
SyMBac.PSF
SyMBac
Index
Edit on GitHub
Index
A
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C
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D
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F
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G
|
L
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M
|
P
|
R
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S
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U
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V
|
W
A
angle (SyMBac.cell.Cell attribute)
C
Cell (class in SyMBac.cell)
centroid() (in module SyMBac.cell_geometry)
convolve_rescale() (in module SyMBac.general_drawing)
D
dt (SyMBac.cell.Cell attribute)
F
find_farthest_vertices() (in module SyMBac.general_drawing)
G
gaussian_2D() (in module SyMBac.PSF)
gen_cell_props_for_draw() (in module SyMBac.general_drawing)
generate_curve_props() (in module SyMBac.general_drawing)
get_centroid() (in module SyMBac.general_drawing)
get_condensers() (in module SyMBac.PSF)
get_distance() (in module SyMBac.general_drawing)
get_fluorescence_kernel() (in module SyMBac.PSF)
get_midpoint() (in module SyMBac.general_drawing)
get_phase_contrast_kernel() (in module SyMBac.PSF)
get_sample_images() (in module SyMBac.misc)
get_space_size() (in module SyMBac.general_drawing)
get_vertices() (in module SyMBac.cell_geometry)
growth_rate_constant (SyMBac.cell.Cell attribute)
L
length (SyMBac.cell.Cell attribute)
M
make_images_same_shape() (in module SyMBac.general_drawing)
max_length (SyMBac.cell.Cell attribute)
max_length_mean (SyMBac.cell.Cell attribute)
max_length_var (SyMBac.cell.Cell attribute)
midpoint_intercept() (in module SyMBac.general_drawing)
module
SyMBac.cell_geometry
SyMBac.general_drawing
SyMBac.misc
SyMBac.PSF
P
place_cell() (in module SyMBac.general_drawing)
position (SyMBac.cell.Cell attribute)
R
resize_mask() (in module SyMBac.misc)
resolution (SyMBac.cell.Cell attribute)
rotate() (in module SyMBac.cell_geometry)
S
somb() (in module SyMBac.PSF)
space (SyMBac.cell.Cell attribute)
SyMBac.cell_geometry
module
SyMBac.general_drawing
module
SyMBac.misc
module
SyMBac.PSF
module
U
unet_weight_map() (in module SyMBac.misc)
V
vertices_slope() (in module SyMBac.general_drawing)
W
wall() (in module SyMBac.cell_geometry)
width (SyMBac.cell.Cell attribute)
width_mean (SyMBac.cell.Cell attribute)
width_var (SyMBac.cell.Cell attribute)